Not sure if this is any help, as the ECUs for the 996R/998S were only sold in cans + chips according to the DP catalogue:
Ducati ECU (Fuel Chip) Application List
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Taken from Ducati SBK Catalogue 2003
(old ECU codes are shown in brackets from 2001 catalogue)
96502394C (08054/1) - 916 Monoposto '94, silencers Racing
965013AAA (08054/3) - 916 Biposto silencers Racing
965015AAA (08054/11) - 996 Racing silencers
965014AAA (08054/6) - 748 Twin-seat silencers Racing
965024AAA (08054/15) - 748R Silencers Racing
96502694C (08054/19) - 916 Monoposto '94, silencers Ø 50
965027AAA (08054/20) - 916 Biposto silencers Ø 50
965025AAA (08054/22) - 996 Silencers Ø 50
96506501B (n/a) - 996S Silencers Racing Ø 50
965028AAA (08054/17) - 748 Biposto silencers Ø 50
965029AAA (08054/18) - 748SPS Silencers Ø 50
965030AAA (08054/16) - 748R Silencers Ø 50
96503394C (08054/2) - 916 Monoposto '94, complete assembly Ø 50
96503494C (08054/4) - 916 Biposto complete assembly Ø 50
965035AAA (08054/5) - 916SP Complete assembly Ø 50
965031AAA (08054/14) - 996 Complete assembly Ø 50
965032AAA (08054/26) - 996SPS/916SPS Complete assembly Ø 50
965036AAA (08054/7) - 748 Biposto complete assembly Ø 50
965044AAA (08054/8) - 748SPS Complete assembly Ø 50
965037AAA (08054/25) - 748R Complete assembly Ø 50
965038AAA (08054/23) - 996 Complete assembly Ø 52
965040AAA (08054/21) - 916 Biposto complete assembly Ø 52
965035AAA (08054/5) - 916 SP Complete assembly Ø 52
965039AAA (08054/24) - 996SPS/916SPS Complete assembly Ø 52
Aluminum silencer set + injection control unit
96418702B (Ø 45) 998 Bip
96419002B (Ø 50) 998S, 996R
Titanium silencer set + injection control unit
96418902B (Ø 45) 998 Bip
96419202B (Ø 50) 998S, 996R
Carbon silencer set + injection control unit
96418802B (Ø 45) 998 Bip
96419102B (Ø 50) 998S, 996R
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Ducati Sporting Club
http://www.DucatiSportingClub.com/ ---------------------------------------