Radial master cylinder and braided lines more probably make bigest differance without changing calipers.  Changed to a radial master on the 996 as first upgrade.  Well worth it.
 P34's from 998 and early 749 999 and aprillias mille.  Great calipers but 65mm bolt spacing. 
http://cgi.ebay.co.uk/DUCATI-749-999...QQcmdZViewItem