It depends on the size of the cans. If they are 45mm then they are a straight swap for standard cans and won't need a new chip.
If they are larger than this, not only will you need a new intermediate piece (the short double-piece behind the right-hand footpeg) to make the cans and main pipes fit together, but you'll also need to replace the chip.
Chips are £28 from your local dealer.
How much does it cost to replace an engine if it runs too lean and ends up holing a piston?
I know what I'd rather spend my money on!
A full list of chips and applications is here:
http://ducatisportingclub.com/xmb/vi...=9814#pid79924