It seems to me that there's a best case and worst case scenario, and both those scenarios are at the opposite end of the spectrum for each party.
Best case for you is if Ducati or Brembo put their hands up and admit that they have a faulty batch of components leaving Brembo's factory and being nailed onto Ducati 749/999's, they give you a replacement bike, compensate you for uninsured loss and bingo, you're one happy bunny. Trouble is that in admitting liability Ducati or Brembo are laying themselves wide open to class actions from around the world, they may have hundreds of claims to deal with (some of which may be bogus), they may even be blamed for loss of life. Brembo's business is based upon the confidence that many automotive companies (cars and bikes) place in the safety of their product and their reputation takes an almighty knock and possibly a drastic shift away from their product to Nissin or whowever. Ducati are just about laying the ghost of dubious reliability earned in the pre American ownership days, when along comes a fault that could possibly kill people, all at a time of falling bike sales. A PR and commercial disaster wouldn't you think?
Any reputable company would do there level best to face up to their responsibilities, but would you admit liability unless you had checked, checked and rechecked any dubious brakes, done some research around you dealer network about how prevalent this was, done some statistical analysis on where any remaining bikes might have been shipped and checked to see how many other manufacturers might have a claim against Brembo. Working for a large corporate, I can tell you 5 weeks is nothing to do that sort of work, and it takes a lot of resource and costs a lot of money just to investigate anything.
So best case for you=worst case for Ducati.
Worst case for you is that they find nothing wrong with the brakes (despite all the checking above), they find no evidence to suggest this is a brake epidemic. They could put it down to inadequate maintenance (corroded, ungreased pistons and pads can stick) or they may find nothing at all wrong and put it down to rider error, after all, they only have your word for the cause of the crash. I'm not doubting your honesty for one moment, but in the same way that insurance companies kick up a fuss the moment you make a claim, you can see that they'd want solid evidence of brake failure.
So worst case for you=best case for Ducati/Brembo
There are a large number of shades of grey between these two black and white examples, but you see what I'm saying?