| I have/had similar issues with my 999. My bike was only engaging at the very end of the clutch let out and rather than shim, the mechanics used a couple of my standard steels which are thicker than those in the carbon set to get the engagment right.
My carbon plates also make the same very sad sounds while engaging, but once on the move seem ok. I have done 1000km's so far with no problems outside of the noises. | 
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