Should be a very straighforward affair. You'll need to load a base map from the CD or their website that most closely reflects your bike setup. After that, you need to take it to dyno centre. John Hackett is your man.
Only just saw this, and i know your away! Let jhp mount it for you on a nice carbon plate mounted on the offside.rather than sticking it to your battery!
Its quite interesting when its fitted connecting it to your usb and watching your bike revs and fuelling on the pc screen!
I downloaded what was the nearest map to mine, but it was very weak at the top rev range, according to john.
The only true way is to have it 'personalised' to your bike.