| Rob, you really should talk to a reputable tuner who has lots of experience setting up Ducati engines.
There are several: Nelly at Cornerspeed who is on this site, Neil at Sigma, John Hackett.
John set up my Corse engine last year including dialing of the cams. He did a superb job as usual. It can make a difference, it just depends how far they are out and how much tuning you've done. I supsect you're just starting down this VERY expensive road. There is no known cure, either, once you've started.
And one final word: Be suspicious of wild horsepower claims. There is LOTS of misinformation around. | 
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